Monday, February 28, 2011

Protocells and Clay






Well maybe.  I think there is plenty of opportunity in basic organic chemistry to form coated water droplets that have sufficient integrity to cook up something strange.  Also recall the work done mixing elementary chemicals in ice fractures for decades.  Clay itself is certainly useful and suggestive since it is degraded volcanic ash which contains a lot of solid crystalline acids to act as hammer and forge to produce more complex molecules.

My point is that a clay particle is capable of strongly inducing chemical reactions.  Thus it is a natural driver for the creation of a protocell, but more like a catalyst than a structural template.

I think we are on the right track to experimentally produce protocells that are able to mimic some of the key functions of a cell. 


Clay-Armored Bubbles May Have Formed First Protocells

by Staff Writers

Cambridge MA (SPX) Feb 09, 2011




Fatty-acid liposomes compartmentalize inside a clay vesicle. Credit: Photo courtesy of Anand Bala Subramaniam, Harvard School of Engineering and Applied Sciences.



A team of applied physicists at Harvard's School of Engineering and Applied Sciences (SEAS), Princeton, and Brandeis have demonstrated the formation of semipermeable vesicles from inorganic clay.

The research, published online this week in the journal Soft Matter, shows that clay vesicles provide an ideal container for the compartmentalization of complex organic molecules.

The authors say the discovery opens the possibility that primitive cells might have formed inside inorganic clay microcompartments.

"A lot of work, dating back several decades, explores the role of air bubbles in concentrating molecules and nanoparticles to allow interesting chemistry to occur," says lead author Anand Bala Subramaniam, a doctoral candidate at SEAS.

"We have now provided a complete physical mechanism for the transition from a two-phase clay-air bubble system, which precludes any aqueous-phase chemistry, to a single aqueous-phase clay vesicle system," Subramaniam says, "creating a semipermeable vesicle from materials that are readily available in the environment."



"Clay-armored bubbles" form naturally when platelike particles of montmorillonite collect on the outer surface of air bubbles under water.

When the clay bubbles come into contact with simple organic liquids like ethanol and methanol, which have a lower surface tension than water, the liquid wets the overlapping plates. As the inner surface of the clay shell becomes wet, the disturbed air bubble inside dissolves.

The resulting clay vesicle is a strong, spherical shell that creates a physical boundary between the water inside and the water outside. The translucent, cell-like vesicles are robust enough to protect their contents in a dynamic, aquatic environment such as the ocean.

Microscopic pores in the vesicle walls create a semipermeable membrane that allows chemical building blocks to enter the "cell," while preventing larger structures from leaving.

Scientists have studied montmorillonite, an abundant clay, for hundreds of years, and the mineral is known to serve as a chemical catalyst, encouraging lipids to form membranes and single nucleotides to join into strands of RNA.

Because liposomes and RNA would have been essential precursors to primordial life, Subramaniam and his coauthors suggest that the pores in the clay vesicles could do double duty as both selective entry points and catalytic sites.

"The conclusion here is that small fatty acid molecules go in and self-assemble into larger structures, and then they can't come out," says principal investigator Howard A. Stone, the Dixon Professor in Mechanical and Aerospace Engineering at Princeton, and a former Harvard faculty member. "If there is a benefit to being protected in a clay vesicle, this is a natural way to favor and select for molecules that can self-organize."

Future research will explore the physical interactions between the platelike clay particles, and between the liquids and the clay. The researchers are also interested to see whether these clay vesicles can, indeed, be found in the natural environment today.

"Whether clay vesicles could have played a significant role in the origins of life is of course unknown," says Subramaniam, "but the fact that they are so robust, along with the well-known catalytic properties of clay, suggests that they may have had some part to play."


Clay-armored bubbles may have formed first protocells

February 7, 2011

Fatty-acid liposomes compartmentalize inside a clay vesicle. Credit: Photo courtesy of Anand Bala Subramaniam, Harvard School of Engineering and Applied Sciences.

(PhysOrg.com) -- A team of applied physicists at Harvard's School of Engineering and Applied Sciences (SEAS), Princeton, and Brandeis have demonstrated the formation of semipermeable vesicles from inorganic clay.

The research, published online this week in the journal Soft Matter, shows that clay vesicles provide an ideal container for the compartmentalization of complex organic molecules.

The authors say the discovery opens the possibility that primitive cells might have formed inside inorganic clay microcompartments.

"A lot of work, dating back several decades, explores the role of air bubbles in concentrating molecules and nanoparticles to allow interesting chemistry to occur," says lead author Anand Bala Subramaniam, a doctoral candidate at SEAS.

"We have now provided a complete physical mechanism for the transition from a two-phase clay–air bubble system, which precludes any aqueous-phase chemistry, to a single aqueous-phase clay vesicle system," Subramaniam says, "creating a semipermeable vesicle from materials that are readily available in the environment."

"Clay-armored bubbles" form naturally when platelike particles of montmorillonite collect on the outer surface of air bubbles under water.

When the clay bubbles come into contact with simple organic liquids like ethanol and methanol, which have a lower surface tension than water, the liquid wets the overlapping plates. As the inner surface of the clay shell becomes wet, the disturbed air bubble inside dissolves.

The resulting clay vesicle is a strong, spherical shell that creates a physical boundary between the water inside and the water outside. The translucent, cell-like vesicles are robust enough to protect their contents in a dynamic, aquatic environment such as the ocean.






The authors' schematic of clay vesicle formation, showing a cut-away view of the clay shell and dissolving bubble at the top, and a view of the water-air interface at the bottom. Credit: Image courtesy of Anand Bala Subramaniam, Harvard School of Engineering and Applied Sciences.

Microscopic pores in the vesicle walls create a semipermeable membrane that allows chemical building blocks to enter the "cell," while preventing larger structures from leaving.

Scientists have studied montmorillonite, an abundant clay, for hundreds of years, and the mineral is known to serve as a chemical catalyst, encouraging lipids to form membranes and single nucleotides to join into strands of RNA. 

Because liposomes and RNA would have been essential precursors to primordial life, Subramaniam and his coauthors suggest that the pores in the clay vesicles could do double duty as both selective entry points and catalytic sites.

"The conclusion here is that small fatty acid molecules go in and self-assemble into larger structures, and then they can't come out," says principal investigator Howard A. Stone, the Dixon Professor in Mechanical and Aerospace Engineering at Princeton, and a former Harvard faculty member. "If there is a benefit to being protected in a clay vesicle, this is a natural way to favor and select for molecules that can self-organize."

####
This SEM image shows the exterior surface of a clay vesicle. Photo courtesy of Anand Bala Subramaniam.

Future research will explore the physical interactions between the platelike clay particles, and between the liquids and the clay. The researchers are also interested to see whether these clay vesicles can, indeed, be found in the natural environment today.

"Whether clay vesicles could have played a significant role in the origins of life is of course unknown," says Subramaniam, "but the fact that they are so robust, along with the well-known catalytic properties of clay, suggests that they may have had some part to play."

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